PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00400g01006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 79aa    MW: 9137.78 Da    PI: 10.9637
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00400g01006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.82.8e-28959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krie+ks rqv f+kRr+g+lKKA+ELS+LCd++vav+ifs++g+ly++ss
  Peinf101Scf00400g01006.1  9 KRIEEKSSRQVAFCKRRKGLLKKAKELSILCDVDVAVVIFSNRGRLYDFSS 59
                              79***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.772161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-27166IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-34160IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MGRKKVEIKR IEEKSSRQVA FCKRRKGLLK KAKELSILCD VDVAVVIFSN RGRLYDFSSN  60
NRYAKAAYDS NKSVIKRLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S1e-17161161Myocyte-specific enhancer factor 2B
1tqe_R1e-17161161Myocyte-specific enhancer factor 2B
1tqe_Q1e-17161161Myocyte-specific enhancer factor 2B
1tqe_P1e-17161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3705237e-87AY370523.1 Petunia x hybrida MADS-box protein 17 (PMADS17) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795053.11e-32PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
RefseqXP_016435773.11e-32PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
RefseqXP_009795052.11e-32PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
RefseqXP_016435771.11e-32PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
SwissprotQ388361e-28AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBLQ6UGR23e-35Q6UGR2_PETHY; MADS-box protein 17 (Fragment)
STRINGSolyc12g087820.1.12e-32(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.24e-22MIKC_MADS family protein